PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G130400.1.p
Common NamePRUPE_ppa025417mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 500aa    MW: 55822.3 Da    PI: 7.0213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G130400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11311357455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G130400.1.p 311 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 357
                         799***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-4022218IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-17304372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-14305361No hitNo description
PROSITE profilePS5088816.037307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9311356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16311369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-15313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEEIIASSSS PQFCQETSAT CQQRLQFIVQ NRPEWWVYAT FWQASKDSND QISLSWAGGH  60
FKSSKDLASK RSNKVMNNYQ PKFGFNNVER KKVINRGCAE SLFPEDLEDL DMRLVDHGVG  120
DVTDSEWFYF YSVSLTQSFA AGHATNNILG RAFCSGGFVW LAGAHELQFY ECERVKEARM  180
HGIQTLVCIA TPCGVLELAS LDVIKEDWGL VHLSKSLFGS ENNRISKQGS RDGNAPVPFP  240
ESGMFSGPQK DFPRQEGDTK EAAPINIGGS SSDSPSDSVG NFTSENTERT RLKKRGRSTN  300
HGPGRESQLL NHVEAERQRR EKLNHRFYVL RSVVPNVSKM DRSSLLADAV AYINQLKSKV  360
EELEAKIQSQ PQNPNMGNVS NLDHHSSQST SSIVDFHHSS SNNNNNNNNN NNNNNKGAGV  420
VEVDVKILGS EAMIRVQCPD QDYPYAKLMN ALKSLGLQVY HASISSVKEM MIQDIVARVP  480
YGFTSEEAMR MGIIKRWYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-25112182192Transcription factor MYC3
4rqw_B7e-25112182192Transcription factor MYC3
4rs9_A7e-25112182192Transcription factor MYC3
4yz6_A7e-25112182192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297LKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245386.10.0PREDICTED: transcription factor bHLH14-like
TrEMBLM5W8H30.0M5W8H3_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-62bHLH family protein